Stitching Macro
This macro will manage images stitching IMSRC will generate black images with the proper size and will call image J plug-in for stitching. (S Preibisch, S Saalfeld, P Tomancak G. Bioinformatics 25 (11), 1463-1465).
The result will appear in the second scan acquisition folder.
This process can take long time depending of the amount of images to be processed.
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TissueDet CM Manual
This macro is developed for tissue detection in confocal microscopes.
The result of this macro will generate capture of mosaics with bounding rectangles covering the objects detected
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest.
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
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CellDet CM Manual
This macro is developed for small objects detection in confocal microscopes.
The result of this macro will capture only one image per object located in its center of mass
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest,
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
Download
|
NOIR CCD Manual
This macro enables the fine capture adjustment to irregular shaped tissues in wide-field microscopes.
The result of this macro disables empty fields for all tissues detected by Tissue Detection routines using bounding rectangles.
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest.
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
Download
|
TissueDet CCD Manual
This macro is developed for tissue detection in Wide-field microscopes.
The result of this macro will generate capture of mosaics with bounding rectangles covering the objects detected
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest,
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
Download
|
CellDet CCD Manual
This macro is developed for small objects detection in confocal microscopes.
The result of this macro will capture only one image per object located in its center of mass
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest,
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
Download
|
NOIR CM Manual
This macro enables the fine capture adjustment to irregular shaped tissues in confocal microscopes.
The result of this macro disables empty fields for all tissues detected by Tissue Detection routines using bounding rectangles.
This macro can be tuned on line for best detection by setting up threshold values for intensity, size or circularity of the objects of interest.
The menu for entering these values is available by clicking “Advanced options button”. In the 2nd scan menu.
Download
|
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